Past SARS-CoV-2 infection protection against re-infection: a systematic review and meta-analysis
Summary
Background
Understanding the level and characteristics of protection from past SARS-CoV-2 infection against subsequent re-infection, symptomatic COVID-19 disease, and severe disease is essential for predicting future potential disease burden, for designing policies that restrict travel or access to venues where there is a high risk of transmission, and for informing choices about when to receive vaccine doses. We aimed to systematically synthesise studies to estimate protection from past infection by variant, and where data allow, by time since infection.
Methods
In this systematic review and meta-analysis, we identified, reviewed, and extracted from the scientific literature retrospective and prospective cohort studies and test-negative case-control studies published from inception up to Sept 31, 2022, that estimated the reduction in risk of COVID-19 among individuals with a past SARS-CoV-2 infection in comparison to those without a previous infection. We meta-analysed the effectiveness of past infection by outcome (infection, symptomatic disease, and severe disease), variant, and time since infection. We ran a Bayesian meta-regression to estimate the pooled estimates of protection. Risk-of-bias assessment was evaluated using the National Institutes of Health quality-assessment tools. The systematic review was PRISMA compliant and was registered with PROSPERO (number CRD42022303850).
Findings
We identified a total of 65 studies from 19 different countries. Our meta-analyses showed that protection from past infection and any symptomatic disease was high for ancestral, alpha, beta, and delta variants, but was substantially lower for the omicron BA.1 variant. Pooled effectiveness against re-infection by the omicron BA.1 variant was 45·3% (95% uncertainty interval [UI] 17·3–76·1) and 44·0% (26·5–65·0) against omicron BA.1 symptomatic disease. Mean pooled effectiveness was greater than 78% against severe disease (hospitalisation and death) for all variants, including omicron BA.1. Protection from re-infection from ancestral, alpha, and delta variants declined over time but remained at 78·6% (49·8–93·6) at 40 weeks. Protection against re-infection by the omicron BA.1 variant declined more rapidly and was estimated at 36·1% (24·4–51·3) at 40 weeks. On the other hand, protection against severe disease remained high for all variants, with 90·2% (69·7–97·5) for ancestral, alpha, and delta variants, and 88·9% (84·7–90·9) for omicron BA.1 at 40 weeks.
Interpretation
Protection from past infection against re-infection from pre-omicron variants was very high and remained high even after 40 weeks. Protection was substantially lower for the omicron BA.1 variant and declined more rapidly over time than protection against previous variants. Protection from severe disease was high for all variants. The immunity conferred by past infection should be weighed alongside protection from vaccination when assessing future disease burden from COVID-19, providing guidance on when individuals should be vaccinated, and designing policies that mandate vaccination for workers or restrict access, on the basis of immune status, to settings where the risk of transmission is high, such as travel and high-occupancy indoor settings.
Funding
Bill & Melinda Gates Foundation, J Stanton, T Gillespie, and J and E Nordstrom.
Introduction
Methods
Study design
Inclusion and exclusion criteria
Any study with results for the protective effect of COVID-19 natural immunity in individuals who were non-vaccinated in comparison with those who were non-vaccinated and COVID-19 naive were included in our analysis. We also included studies that included individuals who were vaccinated but controlled for vaccination status. We included retrospective and prospective cohort studies, and test-negative case-control studies. Any study that included results only for the protective effectiveness of natural immunity in combination with vaccination (ie, hybrid immunity) was excluded from the analysis.
Outcomes
Re-infection was defined by the following characteristics: a positive SARS-CoV-2 PCR test or a rapid-antigen test (RAT) more than 90 days (or in some studies 120 days) after a previously positive PCR test or RAT; two positive PCR tests or RATs separated by four consecutive negative PCR tests; or a positive PCR test or RAT in an individual with a positive IgG SARS-CoV-2 anti-spike antibody test. Symptomatic re-infection was defined as re-infection with SARS-CoV-2 that leads to the development of symptoms, which may include but are not limited to fever, new or increased cough, new or increased shortness of breath, chills, new or increased muscle pain, new loss of taste or smell, sore throat, diarrhoea, and vomiting. Severe re-infection was re-infection with SARS-CoV-2 that led to hospitalisation or death.
Study selection and data extraction
We determined on the basis of title and abstract review whether a study or report pertained to infection immunity from COVID-19. If so, the main text and supplementary material were assessed by two independent reviewers on whether it met the inclusion criteria.
We extracted all available data on protection from past infection by primary infection and re-infection variant. Extracted SARS-CoV-2 lineages were ancestral, mixed (two different specified variants; eg, ancestral and alpha, alpha (B.1.1.7), beta (B.1.351), delta (B.1.617.2), and omicron (BA.1), and its sublineages (BA.2 and BA.4/BA.5), the variants were either confirmed through sequencing or inferred from the timing of the infection and included as mixed variants for the studies that did not report specific variants of concern. Where available, we extracted subgroup analyses of protection as a function of time since primary infection. Where these analyses were not available, we extracted the mean time since primary infection. CIs with negative values were changed to 0·01 during the analysis.
The extraction process was completed manually by one reviewer and independently verified by a second reviewer. When there were disagreements, a third reviewer was consulted.
Risk-of-bias assessment
Data analysis
Risk measures of SARS-CoV-2 infection in individuals with previous infection compared with those who were infection naive (adjusted and unadjusted hazard ratio, adjusted and unadjusted incidence rate ratio, adjusted and unadjusted relative risk, or adjusted and unadjusted odds ratio and CI according to the results available from each study) were extracted from each study. We used adjusted effect sizes where available, otherwise we used unadjusted effect sizes.
Role of the funding source
The funders of the study had no role in the study design, data collection, data analysis, data interpretation, or the writing of the report.
Results
The studies used a variety of approaches to determine past infection status. 16 studies relied on antibody testing alone, 38 studies relied on confirmed test (PCR or RAT) history alone, nine studies used a combination of antibody testing and confirmed test history, and two studies did not specify which approach was used.
TableProtection against omicron sublineages by outcome
Discussion
The primary limitations of our study relate to the limitations of the studies and data included in our systematic review and meta-analysis. First, the number of studies available is generally low, particularly for those that have examined protection as a function of time since infection for severe disease, that report data on the omicron BA.1 variant and its sublineages in particular, and that come from Africa that met our inclusion criteria. Moreover, few data are available beyond a period of 40 weeks after the initial infection. Second, there was evidence of publication bias for three of 13 variant outcomes assessed in our study. Third, in estimating protection, we are relying on observational studies, which are prone to residual confounding. Fourth, studies used a variety of approaches for ascertaining past infection status, comprising antibody prevalence, documented history of infection, or a combination of the two. Incomplete or in some cases over-ascertainment of past infections might bias the estimate of protection. Fifth, underlying studies also vary in the extent to which they measure hospitalisation because of COVID-19 versus hospitalisation with an incidental COVID-19 infection. This bias might affect our estimates of protection against severe disease, particularly during the initial omicron wave when transmission was very high. Finally, in our analyses of protection by time since infection, compositional bias exists in terms of the different time periods that the underlying studies have assessed. We have attempted to control for this bias with the use of study random effects.
Our findings show that immunity from COVID-19 infection confers substantial protection against infection from pre-omicron variants. By comparison, protection against re-infection from the omicron BA.1 variant was substantially reduced and wanes rapidly over time. Protection against severe disease, although based on scarce data, was maintained at a relatively high level up to 1 year after the initial infection for all variants. Our analysis suggests that the level of protection from past infection by variant and over time is at least equivalent if not greater than that provided by two-dose mRNA vaccines.
COVID-19 Forecasting Team
Caroline Stein, Hasan Nassereldine, Reed J D Sorensen, Joanne O Amlag, Catherine Bisignano, Sam Byrne, Emma Castro, Kaleb Coberly, James K Collins, Jeremy Dalos, Farah Daoud, Amanda Deen, Emmanuela Gakidou, John R Giles, Erin N Hulland, Bethany M Huntley, Kasey E Kinzel, Rafael Lozano, Ali H Mokdad, Tom Pham, David M Pigott, Robert C Reiner Jr, Theo Vos, Simon I Hay, Christopher J L Murray, and Stephen S Lim.
Affiliations
Institute for Health Metrics and Evaluation (C Stein PhD, H Nassereldine MD, R J D Sorensen PhD, J O Amlag MPH, C Bisignano MPH, S Byrne MPH, E Castro MS, K Coberly BS, J K Collins BS, J Dalos MSc, F Daoud BS, A Deen MPH, Prof E Gakidou PhD, J R Giles PhD, E N Hulland MPH, B M Huntley BA, K E Kinzel MSPH, Prof R Lozano MD, A H Mokdad PhD, T Pham BS, D M Pigott PhD, R C Reiner Jr PhD, Prof T Vos PhD, Prof S I Hay FMedSci, Prof C J L Murray DPhil, Prof S S Lim PhD), Department of Health Metrics Sciences, School of Medicine (C Stein PhD, Prof E Gakidou PhD, Prof R Lozano MD, A H Mokdad PhD, D M Pigott PhD, R C Reiner Jr PhD, Prof T Vos PhD, Prof S I Hay FMedSci, Prof C J L Murray DPhil, Prof S S Lim PhD), and Department of Global Health (R J D Sorensen PhD, E N Hulland MPH), University of Washington, Seattle, WA, USA.
Contributors
Data sharing
Declaration of interests
DMP reports support from the Bill & Melinda Gates foundation as grant payments made to the Institute for Health Metrics and Evaluation. All other authors declare no competing interests.
References
- 1.
- Wang H
- Paulson KR
- Pease SA
- et al.
Estimating excess mortality due to the COVID-19 pandemic: a systematic analysis of COVID-19-related mortality, 2020–21.
Lancet. 2022; 399: 1513-1536 - 2.
- Barber RM
- Sorensen RJD
- Pigott DM
- et al.
Estimating global, regional, and national daily and cumulative infections with SARS-CoV-2 through Nov 14, 2021: a statistical analysis.
Lancet. 2022; 399: 2351-2380View in Article - 3.
- Reiner Jr, RC
- Collins JK
- Murray CJL
- Forecasting Team C-19
Forecasting the trajectory of the COVID-19 pandemic under plausible variant and intervention scenarios: a global modelling study.
Social Science Research Network,Rochester, NY2022View in Article - 4.
- IHME
COVID-19 projections.
https://covid19.healthdata.org/Date accessed: February 10, 2023
View in Article - 5.
- Adolph C
- Amano K
- Bang-Jensen B
- Fullman N
- Wilkerson J
Pandemic politics: timing state-level social distancing responses to COVID-19.
J Health Polit Policy Law. 2021; 46: 211-233View in Article - 6.
- Wen W
- Chen C
- Tang J
- et al.
Efficacy and safety of three new oral antiviral treatment (molnupiravir, fluvoxamine and paxlovid) for COVID-10: a meta-analysis.
Ann Med. 2022; 54: 516-523View in Article - 7.
- Ge Y
- Zhang W-B
- Wu X
- et al.
Untangling the changing impact of non-pharmaceutical interventions and vaccination on European COVID-19 trajectories.
Nat Commun. 2022; 133106View in Article - 8.
- Hale T
- Angrist N
- Goldszmidt R
- et al.
A global panel database of pandemic policies (Oxford COVID-19 Government Response Tracker).
Nat Hum Behav. 2021; 5: 529-538View in Article - 9.
- European Commission
EU Digital COVID Certificate.
https://ec.europa.eu/info/live-work-travel-eu/coronavirus-response/safe-covid-19-vaccines-europeans/eu-digital-covid-certificate_enDate: June 2, 2022
Date accessed: June 2, 2022
View in Article - 10.
- Centers for Disease Control and Prevention
COVID-19 and travel.
https://www.cdc.gov/coronavirus/2019-ncov/travelers/proof-of-vaccination.htmlDate: June 2, 2022
Date accessed: June 2, 2022
View in Article - 11.
Brazilian Department of Foreign Affairs. Brazil.
https://www.dfa.ie/travel/travel-advice/a-z-list-of-countries/brazil/Date: June 4, 2022
Date accessed: June 4, 2022
View in Article - 12.
Oman Department of Foreign Affairs. Oman.
https://www.dfa.ie/travel/travel-advice/a-z-list-of-countries/oman/Date: June 4, 2022
Date accessed: June 4, 2022
View in Article - 13.
- Tourism Australia T
Covid-19 Travel advice and border status.
https://www.australia.com/en-us/travel-alerts/coronavirus.htmlDate: June 4, 2022
Date accessed: June 4, 2022
View in Article - 14.
- Hansen CH
- Michlmayr D
- Gubbels SM
- Mølbak K
- Ethelberg S
Assessment of protection against reinfection with SARS-CoV-2 among 4 million PCR-tested individuals in Denmark in 2020: a population-level observational study.
Lancet Lond Engl. 2021; 397: 1204-1212 - 15.
- Breathnach AS
- Riley PA
- Cotter MP
- Houston AC
- Habibi MS
- Planche TD
Prior COVID-19 significantly reduces the risk of subsequent infection, but reinfections are seen after eight months.
J Infect. 2021; 82: e11-e12View in Article - 16.
- Nordström P
- Ballin M
- Nordström A
Risk of SARS-CoV-2 reinfection and COVID-19 hospitalisation in individuals with natural and hybrid immunity: a retrospective, total population cohort study in Sweden.
Lancet Infect Dis. 2022; 22: 781-790 - 17.
- Hall VJ
- Foulkes S
- Charlett A
- et al.
SARS-CoV-2 infection rates of antibody-positive compared with antibody-negative health-care workers in England: a large, multicentre, prospective cohort study (SIREN).
Lancet. 2021; 397: 1459-1469 - 18.
- Chemaitelly H
- Nagelkerke N
- Ayoub HH
- et al.
Duration of immune protection of SARS-CoV-2 natural infection against reinfection.
J Travel Med. 2022; 29taac109View in Article - 19.
- Huang AT
- Garcia-Carreras B
- Hitchings MDT
- et al.
A systematic review of antibody mediated immunity to coronaviruses: kinetics, correlates of protection, and association with severity.
Nat Commun. 2020; 114704View in Article - 20.
- Yu J
- Tostanoski LH
- Peter L
- et al.
DNA vaccine protection against SARS-CoV-2 in rhesus macaques.
Science. 2020; 369: 806-811View in Article - 21.
- Muecksch F
- Wise H
- Batchelor B
- et al.
Longitudinal serological analysis and neutralizing antibody levels in coronavirus disease 2019 convalescent patients.
J Infect Dis. 2021; 223: 389-398View in Article - 22.
- Kojima N
- Shrestha NK
- Klausner JD
A systematic review of the protective effect of prior SARS-CoV-2 infection on repeat infection.
Eval Health Prof. 2021; 44: 327-332View in Article - 23.
- Murchu OE
- Byrne P
- Carty PG
- et al.
Quantifying the risk of SARS-CoV-2 reinfection over time.
Rev Med Virol. 2022; 32e2260View in Article - 24.
- Mao Y
- Wang W
- Ma J
- Wu S
- Sun F
Reinfection rates among patients previously infected by SARS-CoV-2: systematic review and meta-analysis.
Chin Med J. 2021; 135: 145-152View in Article - 25.
- Cochrane
Living systematic reviews.
https://community.cochrane.org/review-production/production-resources/living-systematic-reviewsDate: June 25, 2022
Date accessed: June 25, 2022
View in Article - 26.
- Stevens GA
- Alkema L
- Black RE
- et al.
Guidelines for accurate and transparent health estimates reporting: the GATHER statement.
Lancet. 2016; 388: e19-e23 - 27.
- Page MJ
- McKenzie JE
- Bossuyt PM
- et al.
The PRISMA 2020 statement: an updated guideline for reporting systematic reviews.
BMJ. 2021; 1: n71View in Article - 28.
- IHME
Past COVID infection meta analysis.
https://github.com/ihmeuw/past_covid_infection_meta_analysisDate accessed: February 10, 2023
View in Article - 29.
- National Health Lung and Blood Institute
Study quality assessment tools.
https://www.nhlbi.nih.gov/health-topics/study-quality-assessment-toolsDate accessed: February 10, 2023
View in Article - 30.
- Zheng P
- Barber R
- Sorensen RJD
- Murray CJL
- Aravkin AY
Trimmed constrained mixed effects models: formulations and algorithms.
J Comput Graph Stat. 2021; 30: 544-556View in Article - 31.
- Health Data
What is an uncertainty interval.
View in Article - 32.
- Altarawneh HN
- Chemaitelly H
- Ayoub HH
- et al.
Protective effect of previous SARS-CoV-2 infection against omicron BA.4 and BA.5 subvariants.
N Engl J Med. 2022; 387: 1620-1622View in Article - 33.
- Chemaitelly H
- Ayoub HH
- Coyle P
- et al.
Protection of omicron sub-lineage infection against reinfection with another omicron sub-lineage.
Nat Commun. 2022; 134675View in Article - 34.
- Andeweg SP
- de Gier B
- Eggink D
- et al.
Protection of COVID-19 vaccination and previous infection against omicron BA.1, BA.2 and delta SARS-CoV-2 infections.
Nat Commun. 2022; 134738View in Article - 35.
- Altarawneh HN
- Chemaitelly H
- Ayoub HH
- et al.
Effects of previous infection and vaccination on symptomatic omicron infections.
N Engl J Med. 2022; (published online July 7.)View in Article - 36.
- Powell AA
- Kirsebom F
- Stowe J
- et al.
Protection against symptomatic infection with delta (B.1.617.2) and omicron (B.1.1.529) BA.1 and BA.2 SARS-CoV-2 variants after previous infection and vaccination in adolescents in England, August, 2021–March, 2022: a national, observational, test-negative, case-control study.
Lancet Infect Dis. 2022; (published online Nov 24.)View in Article - 37.
- Carazo S
- Skowronski DM
- Brisson M
- et al.
Protection against omicron (B.1.1.529) BA.2 reinfection conferred by primary omicron BA.1 or pre-omicron SARS-CoV-2 infection among health-care workers with and without mRNA vaccination: a test-negative case-control study.
Lancet Infect Dis. 2022; 23: 45-55View in Article - 38.
- Imperial College London
Omicron largely evades immunity from past infection or two vaccine doses. Imperial News.
https://www.imperial.ac.uk/news/232698/omicron-largely-evades-immunity-from-past/Date accessed: June 2, 2022
View in Article - 39.
- Yao L
- Zhu K-L
- Jiang X-L
- et al.
Omicron subvariants escape antibodies elicited by vaccination and BA.2.2 infection.
Lancet Infect Dis. 2022; 22: 1116-1117View in Article - 40.
- Chemaitelly H
- Ayoub HH
- AlMukdad S
- et al.
Protection of prior natural infection compared to mRNA vaccination against SARS-CoV-2 infection and severe COVID-19 in Qatar.
Epidemiology. 2022; (published online March 18.)View in Article - 41.
- Sigal A
- Milo R
- Jassat W
Estimating disease severity of omicron and delta SARS-CoV-2 infections.
Nat Rev Immunol. 2022; 22: 267-269View in Article - 42.
- Nyberg T
- Ferguson NM
- Nash SG
- et al.
Comparative analysis of the risks of hospitalisation and death associated with SARS-CoV-2 omicron (B.1.1.529) and delta (B.1.617.2) variants in England: a cohort study.
Lancet. 2022; 399: 1303-1312 - 43.
Variation in the COVID-19 infection–fatality ratio by age, time, and geography during the pre-vaccine era: a systematic analysis.
Lancet. 2022; 399: 1469-1488View in Article - 44.
- Pilz S
- Theiler-Schwetz V
- Trummer C
- Krause R
- Ioannidis JPA
SARS-CoV-2 reinfections: overview of efficacy and duration of natural and hybrid immunity.
Environ Res. 2022; 209112911View in Article - 45.
- Pulliam JRC
- van Schalkwyk C
- Govender N
- et al.
Increased risk of SARS-CoV-2 reinfection associated with emergence of omicron in South Africa.
Science. 2022; 376eabn4947View in Article - 46.
- Turner JS
- Kim W
- Kalaidina E
- et al.
SARS-CoV-2 infection induces long-lived bone marrow plasma cells in humans.
Nature. 2021; 595: 421-425View in Article - 47.
- Shrotri M
- van Schalkwyk MCI
- Post N
- et al.
T cell response to SARS-CoV-2 infection in humans: a systematic review.
PLoS One. 2021; 16e0245532View in Article - 48.
- Le Bert N
- Tan AT
- Kunasegaran K
- et al.
SARS-CoV-2-specific T cell immunity in cases of COVID-19 and SARS, and uninfected controls.
Nature. 2020; 584: 457-462View in Article - 49.
- Gaebler C
- Wang Z
- Lorenzi JCC
- et al.
Evolution of antibody immunity to SARS-CoV-2.
Nature. 2021; 591: 639-644View in Article - 50.
- Sano K
- Bhavsar D
- Singh G
- et al.
Efficient mucosal antibody response to SARS-CoV-2 vaccination is induced in previously infected individuals.
Allerg Immunol. 2021; (published online Dec 21.)View in Article - 51.
- Azzi L
- Dalla Gasperina D
- Veronesi G
- et al.
Mucosal immune response in BNT162b2 COVID-19 vaccine recipients.
EBioMedicine. 2022; 75103788View in Article - 52.
- Kumar S
- Thambiraja TS
- Karuppanan K
- Subramaniam G
Omicron and delta variant of SARS–CoV–2: a comparative computational study of spike protein.
J Med Virol. 2022; 94: 1641-1649View in Article - 53.
- Elliott P
- Bodinier B
- Eales O
- et al.
Rapid increase in omicron infections in England during December 2021: REACT-1 study.
Science. 2022; 375: 1406-1411View in Article
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Published: February 16, 2023
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Figure 1Data availability (number of input studies) by SARS-CoV-2 variant and outcome for the systematic review as a whole and for the analysis of time since infection
Figure 2Pooled estimate of protection from past SARS-CoV-2 infection against re-infection, symptomatic disease, and severe disease by variant, and number of included studies in each meta-analysis estimate
Figure 3Estimates of protection by time since infection for ancestral, alpha, delta, omicron BA.1, and omicron BA.2 variants
Figure 4Comparison of protection efficacy from past COVID-19 infection versus protection from vaccination (by vaccine type and dose) against re-infection, symptomatic disease, and severe disease for ancestral, alpha, delta, or omicron BA.1 variants
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